CRAN

GSAgm 1.0

Gene Set Analysis using the Gamma Method

Released Apr 21, 2014 by Rama Raghavan

Dependencies

survival 2.37-7 edgeR 3.10.2

GSAgm is an R package that completes a self-contained gene set analysis (GSA) for RNA-seq and SNP data using the Gamma Method.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GSAgm</artifactId>
    <version>1.0-b27</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GSAgm')

Test Results

This package was last tested against Renjin 0.8.2500 on Oct 27, 2017.

• PCgamma-examples
• RNAgamma-examples
• STTtoShapeParameter-examples
• gene_example-examples
• rnaseq_counts-examples
• testdata-examples

Source

View GitHub Mirror

Release History

• 1.0