CRAN
GSMX 1.3
Multivariate Genomic Selection
Released Oct 16, 2017 by Zhenyu Jia
This package can be loaded by Renjin but 2 out 4 tests failed.
An older version of this package is
more compatible with Renjin.
Dependencies
Estimating trait heritability and handling overfitting. This package includes a collection of functions for (1) estimating genetic variance-covariances and calculate trait heritability; and (2) handling overfitting by calculating the variance components and the heritability through cross validation.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>GSMX</artifactId>
<version>1.3-b9</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:GSMX')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.