CRAN

GSSE 0.1

Genotype-Specific Survival Estimation

Released Oct 20, 2015 by Baosheng Liang

Dependencies

zoo 1.8-1 Iso 0.0-17

We propose a fully efficient sieve maximum likelihood method to estimate genotype-specific distribution of time-to-event outcomes under a nonparametric model. We can handle missing genotypes in pedigrees. We estimate the time-dependent hazard ratio between two genetic mutation groups using B-splines, while applying nonparametric maximum likelihood estimation to the reference baseline hazard function. The estimators are calculated via an expectation-maximization algorithm.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GSSE</artifactId>
    <version>0.1-b29</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GSSE')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• EM_PAVA_Func-examples
• Permutation_Test-examples
• Sieve_NPMLE_Bootstrap-examples
• Sieve_NPMLE_Switch-examples
• Simulated_data-examples
• p0G_Func-examples
• p0G_data-examples
• test_stat-examples

Source

View GitHub Mirror

Release History

• 0.1