CRAN
GenABEL 1.8-0
genome-wide SNP association analysis
Released Dec 27, 2013 by Yurii Aulchenko
This package can be loaded by Renjin but 72 out 94 tests failed.
Dependencies
MASS 7.3-50 GenABEL.data 1.0.0
a package for genome-wide association analysis between quantitative or binary traits and single-nucleotide polymorphisms (SNPs).
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.cran</groupId> <artifactId>GenABEL</artifactId> <version>1.8-0-b435</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:GenABEL')
Test Results
This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.
- HWE.show-examples
- PGC-examples
- VIFGC-examples
- VIFGC_ovdom-examples
- Xfix-examples
- add.phdata-examples
- add.plot-examples
- as.character.gwaa.data-examples
- as.character.snp.coding-examples
- as.character.snp.data-examples
- as.character.snp.strand-examples
- as.data.frame.gwaa.data-examples
- as.double.gwaa.data-examples
- as.double.snp.data-examples
- as.genotype-examples
- as.genotype.gwaa.data-examples
- as.genotype.snp.data-examples
- as.hsgeno-examples
- as.hsgeno.gwaa.data-examples
- as.hsgeno.snp.data-examples
- autosomal-examples
- blurGenotype-examples
- catable-examples
- ccfast-examples
- check.marker-class-examples
- check.marker-examples
- check.trait-examples
- checkPackageVersionOnCRAN-examples
- cocohet-examples
- convert.snp.illumina-examples
- convert.snp.mach-examples
- convert.snp.ped-examples
- convert.snp.text-examples
- convert.snp.tped-examples
- crnames-examples
- del.phdata-examples
- descriptives.marker-examples
- descriptives.scan-examples
- descriptives.trait-examples
- dprfast-examples
- egscore-examples
- egscore.old-examples
- emp.ccfast-examples
- emp.qtscore-examples
- estlambda-examples
- export.merlin-examples
- findRelatives-examples
- formetascore-examples
- generateOffspring-examples
- getLogLikelihoodGivenRelation-examples
- grammar-examples
- gwaa.data-class-examples
- hom-examples
- hom.old-examples
- ibs-examples
- ibs.old-examples
- makeTransitionMatrix-examples
- merge.gwaa.data-examples
- merge.snp.data-examples
- mlreg-examples
- mlreg.p-examples
- mmscore-examples
- npsubtreated-examples
- patch_strand-examples
- perid.summary-examples
- plot.check.marker-examples
- plot.scan.gwaa-examples
- plot.scan.gwaa.2D-examples
- polygenic-examples
- polygenic_hglm-examples
- qtscore-examples
- qvaluebh95-examples
- r2fast-examples
- r2fast.old-examples
- recodeChromosome-examples
- reconstructNPs-examples
- redundant-examples
- rhofast-examples
- rntransform-examples
- scan.glm-examples
- scan.gwaa-class-examples
- scan.gwaa.2D-class-examples
- scan.haplo-examples
- scan.haplo.2D-examples
- snp.coding-class-examples
- snp.data-class-examples
- snp.names-examples
- snp.strand-class-examples
- snp.subset-examples
- summary.check.marker-examples
- summary.gwaa.data-examples
- summary.scan.gwaa-examples
- summary.snp.data-examples
- ztransform-examples