CRAN

GenCAT 1.0.3

Genetic Class Association Testing

Released Jun 10, 2016 by Eric Reed

This package can be loaded by Renjin but 3 out 7 tests failed.

Dependencies

ggplot2 2.1.0 dplyr 0.4.3 doParallel 1.0.10 foreach 1.4.3

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GenCAT</artifactId>
    <version>1.0.3-b14</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GenCAT')

Test Results

This package was last tested against Renjin 0.8.2500 on Oct 27, 2017.

Source

R

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Release History