CRAN

MDimNormn 0.8.0

Multi-Dimensional MA Normalization for Plate Effect

Released Aug 12, 2015 by Mun-Gwan Hong

This package is available for Renjin and there are no known compatibility issues.

Normalize data to minimize the difference between sample plates (batch effects). For given data in a matrix and grouping variable (or plate), the function 'normn_MA' normalizes the data on MA coordinates. More details are in the citation. The primary method is 'Multi-MA'. Other fitting functions on MA coordinates can also be employed e.g. loess.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>MDimNormn</artifactId>
    <version>0.8.0-b37</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:MDimNormn')

Test Results

This package was last tested against Renjin 0.9.2682 on Aug 23, 2018.

Source

View GitHub Mirror

Release History

0.8.0