CRAN

MHTmult 0.1.0

Multiple Hypotheses Testing for Multiple Families/Groups Structure

Released May 1, 2017 by Yalin Zhu

A Comprehensive tool for almost all existing multiple testing methods for multiple families. The package summarizes the existing methods for multiple families multiple testing procedures (MTPs) such as double FDR, group Benjamini-Hochberg (GBH) procedure and average FDR controlling procedure. The package also provides some novel multiple testing procedures using selective inference idea.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>MHTmult</artifactId>
    <version>0.1.0-b16</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:MHTmult')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

• DFDR.p.adjust-examples
• DFDR2.p.adjust-examples
• GBH.p.adjust-examples
• avgFDR.p.adjust-examples
• cFDR.cp.adjust-examples
• gbonf.cv-examples
• gbonf.p.adjust-examples
• gsidak.cv-examples
• gsidak.p.adjust-examples

Source

View GitHub Mirror

Release History

• 0.1.0