CRAN

MLPAstats 0.5-9

MLPA analysis to detect gains and loses in genes

Released Feb 11, 2011 by Juan R Gonz�lez

This package can be loaded by Renjin but 1 out 7 tests failed.

Dependencies

nlme 3.1-131.1 boot 1.3-20 tkrplot 0.0-23 pixmap 0.4-11

MLPAstats is a software designed to test copy number differences between case and control samples, identified with multiplex-dependent probe amplification (MLPA) data. The package incorporates several methods for data normalization and copy number alterations such as REX-regression, threshold approach and mixed-models.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>MLPAstats</artifactId>
    <version>0.5-9-b31</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:MLPAstats')

Test Results

This package was last tested against Renjin 0.9.2622 on Apr 7, 2018.

Source

R

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Release History