CRAN
MPAgenomics 1.1.2
Multi-Patient Analysis of Genomic Markers
Released Nov 5, 2014 by Samuel Blanck
This package cannot yet be used with Renjin it depends on other packages which are not available: R.utils 2.6.0
Dependencies
R.utils 2.6.0 spikeslab 1.1.5 glmnet 2.0-16 cghseg 1.0.2-1 changepoint 2.2.2 HDPenReg 0.93.2
Preprocess and analysis of genomic data. MPAgenomics provides wrappers from commonly used packages to streamline their repeated manipulation, offering an easy-to-use pipeline. The segmentation of successive multiple profiles is performed with an automatic choice of parameters involved in the wrapped packages. Considering multiple profiles in the same time, MPAgenomics wraps efficient penalized regression methods to select relevant markers associated with a given outcome.