CRAN

MPR.genotyping 0.8

Maximum Parsimony of Recombination to Infer Parental Genotypes

Released Jan 24, 2018 by Weitong Guo

Dependencies

qtl 1.42-8

Infer parental genotypes based on low-coverage population sequencing data and thus can genotype mapping populations and construct ultra-high density linkage map in a parent-independent manner. Weibo Xie et al. (2010) .

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>MPR.genotyping</artifactId>
    <version>0.8-b5</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:MPR.genotyping')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• NumRecomEvents-examples
• base2Allele-examples
• base2Geno-examples
• base2Geno_ori-examples
• checkData-examples
• fSNP-examples
• genotypeCallsBayes-examples
• hmm.vitFUN.rils-examples
• localMPR-examples
• markerData-examples
• myBaseData-examples
• phenoData-examples

Source

View GitHub Mirror

Release History

• 0.8