CRAN
MSIseq 1.0.0
Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
Released Jun 15, 2015 by Mini Huang
This package cannot yet be used with Renjin it depends on other packages which are not available: IRanges and R.utils 2.6.0
Dependencies
R.utils 2.6.0 rJava RWeka 0.4-38
A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.