CRAN

MeDiChI 0.4.0

MeDiChI ChIP-chip deconvolution library

Released Jul 23, 2012 by David J Reiss

Dependencies

Matrix 1.2-14 lars 1.2 quadprog 1.5-5 corpcor 1.6.9

Model-based deconvolution of genome-wide binding (ChIP-chip) data

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>MeDiChI</artifactId>
    <version>0.4.0-b42</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:MeDiChI')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• MeDiChI-data-examples
• MeDiChI-package-examples
• chip.deconv-examples
• deconv.entire.genome-examples
• fit.peak.profile-examples
• generate.binding.profile-examples
• generate.fake.data-examples

Source

View GitHub Mirror

Release History

• 0.4.0