CRAN

MetaDE 1.0.5

MetaDE: Microarray meta-analysis for differentially expressed gene detection

Released Aug 10, 2012 by Xingbin Wang

Dependencies

survival 2.36-14 impute 1.42.0 combinat 0.0-8 Biobase 2.28.0

MetaDE package implements 12 major meta-analysis methods for differential expression analysis.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>MetaDE</artifactId>
    <version>1.0.5-b67</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:MetaDE')

Test Results

This package was last tested against Renjin 0.8.2500 on Oct 27, 2017.

• MetaDE.ES-examples
• MetaDE.Read-examples
• MetaDE.filter-examples
• MetaDE.match-examples
• MetaDE.merge-examples
• MetaDE.minMCC-examples
• MetaDE.pvalue-examples
• MetaDE.rawdata-examples
• count.DEnumber-examples
• draw.DEnumber-examples
• heatmap.sig.genes-examples
• ind.analysis-examples
• ind.cal.ES-examples

Source

View GitHub Mirror

Release History

• 1.0.5
• 1.0