CRAN

MetaIntegrator 2.0.0

Meta-Analysis of Gene Expression Data

Released Oct 5, 2018 by Aditya M. Rao

This package cannot yet be used with Renjin it depends on other packages which are not available: AnnotationDbi, GEOquery, GEOmetadb, preprocessCore, Biobase, multtest, snplist 0.18.1, dplyr 0.7.7, data.table 1.11.8, and ggpubr 0.1.7

Dependencies

ggpubr 0.1.7 dplyr 0.7.7 data.table 1.11.8 snplist 0.18.1 RMySQL gplots 3.0.1 HGNChelper 0.5.2 RSQLite DT 0.4 ggplot2 3.0.0 pheatmap 1.0.10 zoo 1.8-3 ROCR 1.0-7 magrittr 1.5 stringr 1.3.1 manhattanly 0.2.0 plyr 1.8.4 COCONUT 1.0.2 DBI 1.0.0 rmarkdown 1.10 readr 1.1.1 Metrics 0.1.4 rmeta 3.0 pracma 2.1.8 boot 1.3-20 reshape2 1.4.3 Rmisc 1.5

A pipeline for the meta-analysis of gene expression data. We have assembled several analysis and plot functions to perform integrated multi-cohort analysis of gene expression data (meta- analysis). Methodology described in: .

Source

R

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