CRAN

MetamapsDB 0.0.2

Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

Released Dec 6, 2017 by Wesley GOI

This package cannot yet be used with Renjin it depends on other packages which are not available: IRanges, GenomicRanges, ShortRead, dplyr 0.7.6, tidyr 0.8.1, shiny 1.1.0, and data.table 1.11.4

Dependencies

tidyr 0.8.1 shiny 1.1.0 data.table 1.11.4 dplyr 0.7.6 httr 1.3.1 RCurl cluster 2.0.7-1 purrr 0.2.5 base64enc 0.1-3 lubridate 1.7.4 gridExtra 2.3 stringr 1.3.1 forcats 0.3.0 future 1.9.0 igraph 1.2.2 DBI 1.0.0 RJSONIO 1.3-0 Matrix 1.2-14 ggplot2 3.0.0 RSQLite rgexf 0.15.3 magrittr 1.5 zoo 1.8-3

Functions for path based queries against 'Omics' , a 'NEO4J' database populated with data from metagenomic surveys and their accompanying metabolic and taxonomic annotations.

Source

R

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Release History