CRAN
MonoPhy 1.2
Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny
Released Jul 26, 2016 by Orlando Schwery
This package cannot yet be used with Renjin it depends on other packages which are not available: taxize 0.9.4
Dependencies
taxize 0.9.4 phytools 0.6-44 phangorn 2.4.0 ape 5.1 RColorBrewer 1.1-2
Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.