CRAN

NAM 1.7.2

Nested Association Mapping

Released Apr 12, 2019 by Alencar Xavier

Dependencies

randomForest 4.6-14 Rcpp

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) . It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>NAM</artifactId>
    <version>1.7.2-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:NAM')

Source

View GitHub Mirror

Release History

• 1.7.2
• 1.7.1
• 1.7
• 1.6.5
• 1.6.4
• 1.6.1
• 1.6
• 1.5.5
• 1.5.4
• 1.5.3
• 1.5.1
• 1.5.0
• 1.4.8
• 1.4.7
• 1.4.6
• 1.4.5
• 1.4.4
• 1.4.3
• 1.4.2
• 1.4.1
• 1.4
• 1.3.4
• 1.3.3
• 1.3.2
• 1.3
• 1.2
• 1.1.2
• 1.1
• 1.0.2.2
• 1.0.2.1
• 1.0.2
• 1.0.1
• 1.0