CRAN

NCutYX 0.1.0

Clustering of Omics Data of Multiple Types with a Multilayer Network Representation

Released Feb 9, 2018 by Sebastian J. Teran Hidalgo

This package can be loaded by Renjin but 5 out 8 tests failed.

Dependencies

fields 9.6 MASS 7.3-50 Rcpp glmnet 2.0-16 mvtnorm 1.0-8 RcppEigen 0.3.3.4.0

Omics data come in different forms: gene expression, methylation, copy number, protein measurements and more. 'NCutYX' allows clustering of variables, of samples, and both variables and samples (biclustering), while incorporating the dependencies across multiple types of Omics data. (SJ Teran Hidalgo et al (2017), ).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>NCutYX</artifactId>
    <version>0.1.0-b5</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:NCutYX')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R
C++

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Release History