CRAN

NEArender 1.5

Network Enrichment Analysis

Released Mar 21, 2018 by Ashwini Jeggari

This package can be loaded by Renjin but 4 out 14 tests failed.

Dependencies

RColorBrewer 1.1-2 MASS 7.3-49 ROCR 1.0-7 hexbin 1.27.2

Performs network enrichment analysis against functional gene sets. Benchmarks networks. Renders raw gene profile matrices of dimensionality "N genes x N samples" into the space of gene set (typically pathway) enrichment scores of dimensionality "N pathways x N samples".

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>NEArender</artifactId>
    <version>1.5-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:NEArender')

Test Results

This package was last tested against Renjin 0.9.2635 on Apr 26, 2018.

Source

R

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Release History