CRAN

NEff 1.0

Calculating effective sizes based on known demographic parameters of a population

Released Sep 10, 2013 by Annegret Grimm

This package can be loaded by Renjin but all tests failed.

Dependencies

NEff is an individual based model. This package uses demographic parameter of a population to calculate annual effective sizes and effective population sizes (per generation). It assumes that no migration and mutation is occurring. A defined number of alleles and loci will be used to simulate the genotypes of the individuals. These results will help managers to define existing populations as viable or not.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>NEff</artifactId>
    <version>1.0-b243</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:NEff')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 27, 2018.

population-examples

Source

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