CRAN

NEpiC 1.0.1

Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals

Released Mar 26, 2016 by Peifeng Ruan

This package is available for Renjin and there are no known compatibility issues.

Dependencies

Package for a Network assisted algorithm for Epigenetic studies using mean and variance Combined signals: NEpiC. NEpiC combines both signals in mean and variance differences in methylation level between case and control groups searching for differentially methylated sub-networks (modules) using the protein-protein interaction network.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>NEpiC</artifactId>
    <version>1.0.1-b27</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:NEpiC')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

View GitHub Mirror

Release History

1.0.1
1.0