CRAN
OTUtable 1.1.2
North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Released May 26, 2018 by Alexandra Linz
Analyses of OTU tables produced by 16S rRNA gene amplicon sequencing, as well as example data. It contains the data and scripts used in the paper Linz, et al. (2017) "Bacterial community composition and dynamics spanning five years in freshwater bog lakes,"
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>OTUtable</artifactId>
<version>1.1.2-b1</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:OTUtable')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.
- bog_subset-examples
- chao1-examples
- clean_TaxAss_taxonomy-examples
- clean_mothur_taxonomy-examples
- clean_shared-examples
- combine_otus-examples
- extract_date-examples
- filter_otus-examples
- grab_group-examples
- make_do_matrix-examples
- make_temp_matrix-examples
- obs_richness-examples
- pielou-examples
- plot_column-examples
- reduce_names-examples
- remove_reps-examples
- rotate-examples
- shannon-examples
- year_subset-examples
- zscore-examples