CRAN

OxyBS 1.5

Processing of Oxy-Bisulfite Microarray Data

Released Feb 20, 2017 by E. Andres Houseman

This package can be loaded by Renjin but no tests could be found for the package.

Provides utilities for processing of Oxy-Bisulfite microarray data (e.g. via the Illumina Infinium platform, ) with tandem arrays, one using conventional bisulfite conversion, the other using oxy-bisulfite conversion.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>OxyBS</artifactId>
    <version>1.5-b15</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:OxyBS')

Source

R

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Release History