CRAN
QCGWAS 1.0-8
Quality Control of Genome Wide Association Study results
Released Feb 12, 2014 by Peter J. van der Most
This package is available for Renjin and there are no known compatibility issues.
Tools for (automated and manual) quality control of the results of Genome Wide Association Studies
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.cran</groupId> <artifactId>QCGWAS</artifactId> <version>1.0-8-b247</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:QCGWAS')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.
- HQ_filter-examples
- QC_GWAS-examples
- QC_histogram-examples
- QC_plots-examples
- QQ_plot-examples
- calc_kurtosis-examples
- check_P-examples
- convert_impstatus-examples
- create_hapmap_reference-examples
- identify_column-examples
- load_GWAS-examples
- match_alleles-examples
- plot_distribution-examples
- plot_precision-examples
- plot_regional-examples
- plot_skewness-examples
- switch_strand-examples
- translate_header-examples