CRAN

Quartet 1.0.2

Comparison of Phylogenetic Trees Using Quartet and Bipartition Measures

Released Mar 6, 2019 by Martin R. Smith

This package cannot yet be used with Renjin it depends on other packages which are not available: TreeSearch 0.2.2 and Rdpack 0.10-1

Dependencies

Rdpack 0.10-1 TreeSearch 0.2.2 memoise 1.1.0 ape 5.2 Rcpp Ternary 1.0.2

Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 , and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 for pairs of bifurcating trees.

Source

R
C
C++

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