CRAN

TDA 1.6.5

Statistical Tools for Topological Data Analysis

Released Feb 7, 2019 by Jisu Kim

This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and 16 out 24 tests failed.

Dependencies

BH 1.69.0-1 scales 1.0.0 RcppEigen 0.3.3.5.0 FNN 1.1.2.2 igraph 1.2.2 Rcpp

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' , 'Dionysus' , and 'PHAT' . This package also implements the methods in Fasy et al. (2014) and Chazal et al. (2014) for analyzing the statistical significance of persistent homology features.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>TDA</artifactId>
    <version>1.6.5-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:TDA')

Test Results

This package was last tested against Renjin 0.9.2719 on Feb 9, 2019.

Source

C++

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