CRAN
TFisher 0.2.0
Optimal Thresholding Fisher's P-Value Combination Method
Released Mar 21, 2018 by Hong Zhang
Dependencies
Matrix 1.2-14 sn 1.5-2 mvtnorm 1.0-8
We provide the cumulative distribution function (CDF), quantile, and statistical power calculator for a collection of thresholding Fisher's p-value combination methods, including Fisher's p-value combination method, truncated product method and, in particular, soft-thresholding Fisher's p-value combination method which is proven to be optimal in some context of signal detection. The p-value calculator for the omnibus version of these tests are also included. For reference, please see Hong Zhang and Zheyang Wu. "TFisher Tests: Optimal and Adaptive Thresholding for Combining p-Values", submitted.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>TFisher</artifactId>
<version>0.2.0-b4</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:TFisher')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.
- p.soft-examples
- p.soft.omni-examples
- p.tfisher-examples
- p.tfisher.omni-examples
- p.tpm-examples
- p.tpm.omni-examples
- power.soft-examples
- power.tfisher-examples
- power.tpm-examples
- q.soft-examples
- q.tfisher-examples
- q.tpm-examples
- stat.soft-examples
- stat.soft.omni-examples
- stat.tfisher-examples
- stat.tfisher.omni-examples
- stat.tpm-examples
- stat.tpm.omni-examples