CRAN

TKF 0.0.8

Pairwise Distance Estimation with TKF91 and TKF92 Model

Released Apr 18, 2015 by Ge Tan

This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and 4 out 5 tests failed.

Dependencies

phytools 0.6-44 phangorn 2.4.0 numDeriv 2016.8-1 ape 5.1 expm 0.999-2

Pairwise evolutionary distance estimation between protein sequences with the TKF91 and TKF92 model, which consider all the possible paths of transforming from one sequence to another.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>TKF</artifactId>
    <version>0.0.8-b57</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:TKF')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R
C

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Release History