CRAN

VDAP 2.0.0

Peptide Array Analysis Tools

Released May 22, 2016 by Cody Moore

This package can be loaded by Renjin but 4 out 10 tests failed.

Dependencies

ggplot2 2.1.0 reshape2 1.4.1 drc 2.5-12 stringr 1.0.0

Analyze Peptide Array Data and characterize peptide sequence space. Allows for high level visualization of global signal, Quality control based on replicate correlation and/or relative Kd, calculation of peptide Length/Charge/Kd parameters, Hits selection based on RFU Signal, and amino acid composition/basic motif recognition with RFU signal weighting. Basic signal trends can be used to generate peptides that follow the observed compositional trends.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>VDAP</artifactId>
    <version>2.0.0-b17</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:VDAP')

Test Results

This package was last tested against Renjin 0.8.2500 on Oct 27, 2017.

Source

R

View GitHub Mirror

Release History