CRAN

XMRF 1.0

Markov Random Fields for High-Throughput Genetics Data

Released Jun 25, 2015 by Ying-Wooi Wan

Dependencies

Matrix 1.2-14 glmnet 2.0-16 snowfall 1.84-6.1 MASS 7.3-50 igraph 1.2.2

Fit Markov Networks to a wide range of high-throughput genomics data.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>XMRF</artifactId>
    <version>1.0-b87</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:XMRF')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.

• XMRF-examples
• XMRF-package-examples
• XMRF.Sim-examples
• plot.GMS-examples
• plotNet-examples
• processSeq-examples

Source

View GitHub Mirror

Release History

• 1.0