CRAN

ZIBseq 1.2

Differential Abundance Analysis for Metagenomic Data via Zero-Inflated Beta Regression

Released Jun 14, 2017 by Hongliang Chen

This package is available for Renjin and there are no known compatibility issues.

Dependencies

nlme 3.1-137 gamlss.dist 5.0-5 gamlss 5.0-8

Detects abundance differences across clinical conditions. Besides, it takes the sparse nature of metagenomic data into account and handles compositional data efficiently.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>ZIBseq</artifactId>
    <version>1.2-b17</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:ZIBseq')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

calc_qvalues-examples

Source

View GitHub Mirror