CRAN

ace2fastq 0.6.0

ACE File to FASTQ Converter

Released Jun 20, 2019 by Reinhard Simon

This package can be loaded by Renjin but 1 out 2 tests failed.

Dependencies

stringr 1.4.0

The ACE file format is used in genomics to store contigs from sequencing machines. This tools converts it into FASTQ format. Both formats contain the sequence characters and their corresponding quality information. Unlike the FASTQ file, the ace file stores the quality values numerically. The conversion algorithm uses the standard Sanger formula. The package facilitates insertion into pipelines, and content inspection.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>ace2fastq</artifactId>
    <version>0.6.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:ace2fastq')

Test Results

This package was last tested against Renjin 0.9.2726 on Jul 13, 2019.

Source

R

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Release History