CRAN

admixturegraph 1.0.2

Admixture Graph Manipulation and Fitting

Released Dec 13, 2016 by Thomas Mailund

This package is available for Renjin and there are no known compatibility issues.

Dependencies

MASS 7.3-47 neldermead 1.0-10 dplyr 0.7.4 doParallel 1.0.11 ggplot2 2.2.1 pracma 2.1.1 foreach 1.4.4

Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data -- for example by comparing the sign of f_4-statistics with the signs predicted by the graph -- and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>admixturegraph</artifactId>
    <version>1.0.2-b12</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:admixturegraph')

Test Results

This package was last tested against Renjin 0.8.2543 on Dec 17, 2017.

Source

R

View GitHub Mirror

Release History