CRAN

admixturegraph 1.0.2

Admixture Graph Manipulation and Fitting

Released Dec 13, 2016 by Thomas Mailund [cre, aut], Kalle Leppala [aut], Svend Nielsen [aut]

This package is available for Renjin and there are no known compatibility issues.

Dependencies

MASS 7.3-45 neldermead 1.0-10 ggplot2 2.2.0 dplyr 0.5.0 foreach 1.4.3 pracma 1.9.5 doParallel 1.0.10

Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data -- for example by comparing the sign of f_4-statistics with the signs predicted by the graph -- and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>admixturegraph</artifactId>
    <version>1.0.2-b8</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:admixturegraph')

Test Results

This package was last tested against Renjin 0.8.2442 on Sep 25, 2017.

Source

R

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Release History