CRAN

adwave 1.1

Wavelet Analysis of Genomic Data from Admixed Populations

Released Jun 25, 2015 by Jean Sanderson

This package can be loaded by Renjin but 3 out 5 tests failed.

Dependencies

waveslim 1.12

Implements wavelet-based approaches for describing population admixture. Principal Components Analysis (PCA) is used to define the population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes. For more details, see Sanderson et al. (2015).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>adwave</artifactId>
    <version>1.1-b19</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:adwave')

Test Results

This package was last tested against Renjin 0.8.2077 on Jun 11, 2016.

Source

R

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Release History