CRAN

alakazam 0.2.10

Immunoglobulin Clonal Lineage and Diversity Analysis

Released Mar 30, 2018 by Jason Vander Heiden

This package cannot yet be used with Renjin it depends on other packages which are not available: seqinr 3.4-5, dplyr 0.7.4, ggplot2 2.2.1, and readr 1.1.1

Dependencies

ggplot2 2.2.1 readr 1.1.1 seqinr 3.4-5 dplyr 0.7.4 igraph 1.2.1 progress 1.1.2 stringi lazyeval 0.2.1 Rcpp scales 0.5.0

Provides immunoglobulin (Ig) sequence lineage reconstruction, diversity profiling, and amino acid property analysis. Citations: Gupta and Vander Heiden, et al (2017) , Stern, Yaari and Vander Heiden, et al (2014) .