Visualizing Multiple Sequence Alignments with 'ggplot2'
Released Jul 5, 2018 by Stephanie J. Spielman
This package is available for Renjin and there are no known compatibility issues.
Create extensible figures of multiple sequence alignments, using the 'ggplot2' plotting engine. 'alignfigr' will create a baseline figure of a multiple sequence alignment which can be fully customized to the user's liking with standard 'ggplot2' features.
This package can be included as a dependency from a Java or Scala project by including
the following your project's
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.cran</groupId> <artifactId>alignfigR</artifactId> <version>0.1.1-b2</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
If you're using Renjin from the command line, you load this library by invoking:
This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.