CRAN

allelematch 2.5

Identifying unique multilocus genotypes where genotyping error and missing data may be present

Released Sep 19, 2014 by Paul Galpern

This package can be loaded by Renjin but no tests could be found for the package.

Dependencies

dynamicTreeCut 1.63-1

This package provides tools for the identification of unique of multilocus genotypes when both genotyping error and missing data may be present. The package is targeted at those working with large datasets and databases containing multiple samples of each individual, a situation that is common in conservation genetics, and particularly in non-invasive wildlife sampling applications. Functions explicitly incorporate missing data, and can tolerate allele mismatches created by genotyping error. If you use this tool, please cite the package using the journal article in Molecular Ecology Resources (Galpern et al., 2012). Please use citation('allelematch') to find this. Due to changing CRAN policy, and the size and compile time of the vignettes, they can no longer be distributed with this package. Please contact the package primary author, or visit the allelematch site for a complete vignette (http://nricaribou.cc.umanitoba.ca/allelematch/). For users with access to academic literature, tutorial material is also available as supplementary material to the article describing this software.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>allelematch</artifactId>
    <version>2.5-b232</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:allelematch')

Source

R

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Release History