CRAN

apTreeshape 1.4-5

Analyses of Phylogenetic Treeshape

Released Nov 9, 2012 by Nicolas Bortolussi, Eric Durand, Michael Blum, Olivier Francois

This package is available for Renjin and there are no known compatibility issues.

Dependencies

ape 3.0-6 quantreg 4.91

apTreeshape is mainly dedicated to simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>apTreeshape</artifactId>
    <version>1.4-5-b248</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:apTreeshape')

Test Results

This package was last tested against Renjin 0.8.2442 on Sep 25, 2017.