CRAN
dMod 1.0.0
Dynamic Modeling and Parameter Estimation in ODE Models
Released Apr 23, 2019 by Daniel Kaschek
This package cannot yet be used with Renjin it depends on other packages which are not available: dplyr 0.8.0.1 and ggplot2 3.1.1
An older version of this package is
more compatible with Renjin.
Dependencies
ggplot2 3.1.1 dplyr 0.8.0.1 cOde 1.0.0 deSolve 1.21 rootSolve 1.7 foreach 1.4.4 plyr 1.8.4 doParallel 1.0.14 stringr 1.4.0
The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.