CRAN

deTS 1.0

Tissue-Specific Enrichment Analysis

Released Feb 22, 2019 by Guangsheng Pei

Dependencies

RColorBrewer 1.1-2 pheatmap 1.0.12

Tissue-specific enrichment analysis to assess lists of candidate genes or RNA-Seq expression profiles. Pei G., Dai Y., Zhao Z. Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>deTS</artifactId>
    <version>1.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:deTS')

Test Results

This package was last tested against Renjin 0.9.2724 on Feb 24, 2019.

• ENCODE_z_score-examples
• GTEx_t_score-examples
• GWAS_gene-examples
• GWAS_gene_multiple-examples
• correction_factor-examples
• query_ENCODE-examples
• query_GTEx-examples
• tsea.analysis-examples
• tsea.analysis.multiple-examples
• tsea.expression.decode-examples
• tsea.expression.normalization-examples
• tsea.plot-examples
• tsea.summary-examples

Source

View GitHub Mirror

Release History

• 1.0