CRAN
dispRity 1.2.3
Measuring Disparity
Released Mar 13, 2019 by Thomas Guillerme
Dependencies
paleotree 3.1.3 Claddis 0.3.0 phyclust 0.1-23 ade4 1.7-11 geiger 2.0.6.1 mnormt 1.5-5 phangorn 2.4.0 ape 5.2 geometry 0.4.0 vegan 2.5-4 geoscale 1.1
A modular package for measuring disparity from multidimensional matrices. Disparity can be calculated from any matrix defining a multidimensional space. The package provides a set of implemented metrics to measure properties of the space and allows users to provide and test their own metrics. The package also provides functions for looking at disparity in a serial way (e.g. disparity through time) or per groups as well as visualising the results. Finally, this package provides several basic statistical tests for disparity analysis.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.cran</groupId> <artifactId>dispRity</artifactId> <version>1.2.3-b1</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:dispRity')
Test Results
This package was last tested against Renjin 0.9.2724 on Mar 15, 2019.
- adonis.dispRity-examples
- apply.NA-examples
- bhatt.coeff-examples
- boot.matrix-examples
- char.diff-examples
- check.morpho-examples
- chrono.subsets-examples
- clean.data-examples
- combine.subsets-examples
- crown.stem-examples
- custom.subsets-examples
- dispRity-examples
- dispRity.metric-examples
- dispRity.per.group-examples
- dispRity.through.time-examples
- dtt.dispRity-examples
- extinction.subsets-examples
- extract.dispRity-examples
- fill.dispRity-examples
- get.bin.ages-examples
- get.contrast.matrix-examples
- get.subsets-examples
- make.dispRity-examples
- make.metric-examples
- matrix.dispRity-examples
- model.test.sim-examples
- nodes.coordinates-examples
- null.test-examples
- pair.plot-examples
- plot.char.diff-examples
- plot.dispRity-examples
- print.dispRity-examples
- random.circle-examples
- rescale.dispRity-examples
- sim.morpho-examples
- size.subsets-examples
- slice.tree-examples
- sort.dispRity-examples
- space.maker-examples
- summary.dispRity-examples
- test.dispRity-examples
- tree.age-examples