CRAN

gap 1.2.1

Genetic Analysis Package

Released Jun 5, 2019 by Jing Hua Zhao

It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>gap</artifactId>
    <version>1.2.1-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:gap')

Test Results

This package was last tested against Renjin 0.9.2726 on Jul 13, 2019.

• BFDP-examples
• fbsize-examples
• pbsize-examples
• tscc-examples

Source

View GitHub Mirror

Release History

• 1.2.1
• 1.1-22
• 1.1-21
• 1.1-20
• 1.1-17
• 1.1-16
• 1.1-14
• 1.1-13
• 1.1-12
• 1.1-10
• 1.1-9
• 1.1-8
• 1.1-6
• 1.1-3
• 1.1-2
• 1.1-1
• 1.1-0
• 1.0-23
• 1.0-22
• 1.0-21
• 1.0-20
• 1.0-17
• 1.0-15
• 1.0-14
• 1.0-13
• 1.0-12
• 1.0-11
• 1.0-10
• 1.0-9
• 1.0-8
• 1.0-6
• 1.0-5
• 1.0-3
• 1.0-2
• 1.0-1
• 0.8-3
• 0.8-2
• 0.8
• 0.7
• 0.5
• 0.4
• 0.3