CRAN
gbs2ploidy 1.0
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
Released Dec 1, 2016 by Zachariah Gompert
This package is available for Renjin and there are no known compatibility issues.
Dependencies
Functions for inference of ploidy from (Genotyping-by-sequencing) GBS data, including a function to infer allelic ratios and allelic proportions in a Bayesian framework.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>gbs2ploidy</artifactId>
<version>1.0-b15</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:gbs2ploidy')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.