CRAN
geiger 2.0.6.2
Analysis of Evolutionary Diversification
Released Jun 4, 2019 by ORPHANED
Dependencies
digest 0.6.19 deSolve 1.23 subplex 1.5-4 MASS 7.3-51.4 ncbit 2013.03.29 colorspace 1.4-1 ape 5.3 Rcpp coda 0.19-2 mvtnorm 1.0-11
Methods for fitting macroevolutionary models to phylogenetic trees.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>geiger</artifactId>
<version>2.0.6.2-b1</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:geiger')
Test Results
This package was last tested against Renjin 0.9.2726 on Jul 13, 2019.
- aicm-examples
- aicw-examples
- aov.phylo-examples
- bd.ms-examples
- congruify.phylo-examples
- dcount-examples
- drop.extinct-examples
- dtt-examples
- fitContinuous-examples
- fitDiscrete-examples
- name.check-examples
- nodelabel.phylo-examples
- ratematrix-examples
- rc-examples
- rescale-examples
- sim.bd-examples
- sim.bdtree-examples
- sim.char-examples
- subset.phylo-examples
- tips-examples
- treedata-examples