CRAN

genBaRcode 1.1.0

Analysis and Visualization Tools for Genetic Barcode Data

Released Aug 10, 2018 by Lars Thielecke

This package cannot yet be used with Renjin it depends on other packages which are not available: Biostrings, S4Vectors, ggtree, ShortRead, dplyr 0.7.6, and shiny 1.1.0

Dependencies

shiny 1.1.0 dplyr 0.7.6 stringdist 0.9.5.1 VennDiagram 1.6.20 RColorBrewer 1.1-2 futile.logger visNetwork 2.0.4 ggseqlogo 0.1 foreach 1.4.4 igraph 1.2.2 ggnetwork 0.5.1 reshape2 1.4.3 ggplot2 3.0.0 phangorn 2.4.0 network 1.13.0.1 ape 5.1 doParallel 1.0.11

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) ) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) ).

Source

R

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