CRAN
geneSignatureFinder 2014.02.17
A Gene-signatures finder tools
Released Mar 7, 2014 by Stefano M. Pagnotta
This package can be loaded by Renjin but 5 out 16 tests failed.
Dependencies
cluster 2.0.7-1 survival 2.42-3 class 7.3-14
A tool for finding an ensemble gene-signature by a steepest ascending algorithm partially supervised by survival time data.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>geneSignatureFinder</artifactId>
<version>2014.02.17-b33</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:geneSignatureFinder')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.
- BHcorrection-examples
- BICs-examples
- NCPUS-examples
- classify-examples
- ensembleTable-examples
- geNSCLC-examples
- goodAndPoorClassification-examples
- importance-examples
- puttingAllTogether-examples
- removeGeneFrom-examples
- searchResultsSummaryTable-examples
- seedsFinder-examples
- signatureFinder-examples
- signatureSummaryTable-examples
- stNSCLC-examples
- testGE-examples