CRAN
gitter 1.1.1
Quantification of Pinned Microbial Cultures
Released Oct 11, 2015 by Omar Wagih
This package cannot yet be used with Renjin it depends on other packages which are not available: EBImage and PET 0.5.1
Dependencies
PET 0.5.1 ggplot2 3.0.0 jpeg 0.1-8 tiff 0.1-5 logging 0.7-103
The goal of this package is to allow users to robustly and quickly grid and quantify sizes of pinned colonies in plate images. gitter works by first finding the grid of colonies from a preprocessed image and then locating the bounds of each colony separately. It includes several image pre-processing techniques, such as autorotation of plates, noise removal, contrast adjustment and image resizing.