CRAN

globalGSA 1.0

Global Gene-Set Analysis for Association Studies.

Released Oct 23, 2013 by Natalia Vilor

This package is available for Renjin and there are no known compatibility issues.

Implementation of three different Gene set analysis (GSA) algorithms for combining the individual pvalues of a set of genetic variats (SNPs) in a gene level pvalue. The implementation includes the selection of the best inheritance model for each SNP.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>globalGSA</artifactId>
    <version>1.0-b244</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:globalGSA')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

Source

R

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Release History