CRAN

gpmap 0.1.1

Analysing and plotting genotype-phenotype maps

Released Jan 9, 2014 by Arne B. Gjuvsland

This package is available for Renjin and there are no known compatibility issues.

Dependencies

foreach 1.4.4 ggplot2 2.2.1 plyr 1.8.4 isotone 1.1-0

This package contains tools for studying genotype-phenotype (GP) maps for bi-allelic loci underlying quantitative phenotypes. The 0.1 version is released in connection with the publication of Gjuvsland et al. (2003) and implements basic line plots and the monotonicity measures for GP maps presented in the paper. Reference: Gjuvsland AB, Wang Y, Plahte E and Omholt SW (2013) Monotonicity is a key feature of genotype-phenotype maps. Front. Genet. 4:216. doi: 10.3389/fgene.2013.00216 [\href{http://www.frontiersin.org/Journal/10.3389/fgene.2013.00216/full}{link}]

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>gpmap</artifactId>
    <version>0.1.1-b36</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:gpmap')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R

View GitHub Mirror

Release History