CRAN

gsalib 2.1

Utility Functions For GATK

Released Dec 10, 2014 by Geraldine Van der Auwera

This package is available for Renjin and there are no known compatibility issues.

This package contains utility functions used by the Genome Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for variant discovery in high-throughput sequencing data.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>gsalib</artifactId>
    <version>2.1-b241</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:gsalib')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 24, 2018.

Source

R

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Release History